🚫 Why Glutaraldehyde Is No Longer Used for Endoscope Disinfection in the UK
- FRCPath Prep Medical Microbiology Consultants

- Jul 28, 2025
- 3 min read

Date: July 2025
Author: FRCPathPrep Editorial Team
Category: Infection Control | FRCPath Part 2
💡 Quick Summary
Once widely used for disinfecting flexible endoscopes, glutaraldehyde has now been almost entirely phased out in UK healthcare. If you're preparing for FRCPath Medical Microbiology Part 2, understanding why is essential for OSPE, viva, or infection control SAQs — especially those involving decontamination failures or occupational health issues.
🔬 What Was Glutaraldehyde Used For?
Glutaraldehyde is a high-level disinfectant that was commonly used to disinfect heat-sensitive medical equipment like flexible endoscopes. A 2% alkaline solution was traditionally used in cold disinfection tanks, effective against:
Vegetative bacteria
Mycobacteria
Viruses and fungi
(With prolonged exposure) some bacterial spores
⚠️ So Why Was It Abandoned?
The UK's move away from glutaraldehyde reflects concerns about safety, compliance, efficacy — and prion transmission risk.
❗ 1. Occupational Safety Concerns (COSHH)
Respiratory Sensitiser: Glutaraldehyde is a potent trigger for occupational asthma, rhinitis, and bronchial hyperreactivity.
Skin Irritant: Direct contact causes dermatitis and chemical burns.
Vapour Hazard: Even low vapour levels can cause symptoms, especially in poorly ventilated reprocessing areas.
The HSE (Health & Safety Executive) and COSHH Regulations mandate tight control or substitution of such hazardous agents.
❌ 2. Process Control Failures in Manual Disinfection
Manual soaking relies heavily on perfect technique — incorrect concentration, temperature, or soaking time = failure.
No inactivation of biofilm or proteinaceous material if pre-cleaning is suboptimal.
Residual glutaraldehyde can remain inside channels, causing chemical injury to patients.
Inconsistent reproducibility made it non-compliant with HTM 01-06, BSG, and JAG standards.
🧬 3. Prion Transmission Concerns
One of the major reasons glutaraldehyde is now unsuitable is its ineffectiveness against prion proteins, such as abnormal PrP^Sc associated with:
Variant CJD
Iatrogenic CJD
Other transmissible spongiform encephalopathies
🔎 Why It Matters:
Prions are resistant to chemical disinfectants, including glutaraldehyde.
Studies show glutaraldehyde may even fix prion proteins to instruments, making them harder to remove during cleaning.
For any reusable instrument (including endoscopes) potentially exposed to high-infectivity tissues (e.g. tonsils, brain), validated prion inactivation methods must be used — typically involving:
Single-use instruments, or
Steam sterilisation at high temp/pressure after validated cleaning.
Hence, glutaraldehyde does not meet UK decontamination policy for instruments with any conceivable prion exposure.
✅ 4. Better Alternatives Are Now Standard
Modern NHS practice uses validated automated endoscope reprocessors (AERs) that use:
Peracetic acid
Hydrogen peroxide
In some cases, ortho-phthalaldehyde (OPA)
These are:
Safer for staff
More effective against pathogens and biofilm
Fully compatible with traceability, reproducibility, and audit
📚 UK Guidance Snapshot
Guidance | Position on Glutaraldehyde |
HTM 01-06 | Avoid glutaraldehyde; not suitable for safe reprocessing |
COSHH/HSE | Hazardous; respiratory and skin sensitiser |
BSG/JAG | Supports automated, validated systems |
ACDP TSE Working Group | Prion risks: glutaraldehyde inadequate |
💬 In FRCPath Exam Terms...
❝ Glutaraldehyde is no longer recommended for endoscope disinfection in the UK due to its health risks to staff, unreliability in manual processes, incompatibility with prion decontamination requirements, and the availability of safer validated alternatives. Current UK guidance favours automated reprocessors using agents like peracetic acid. ❞
🧠 FRCPath Part 2 Tip
Be ready to explain:
Difference between high-level disinfection vs sterilisation
What’s needed for TSE-prion risk mitigation
How to respond to staff exposure complaints
What you’d do if glutaraldehyde was found in use in an audit
📌 Final Takeaway
The shift away from glutaraldehyde reflects the NHS’s commitment to patient safety, staff wellbeing, and modern infection control standards. Its inability to neutralise prions, coupled with occupational hazard, makes it obsolete for today’s endoscopy and surgical environments.
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